OME-NGFF validator

Validating: /1/.zattrs

Using version 0.2. Using schema: /v0.2/schemas/image.schema

✓

Open with:

See napari.org for install instructions.
Then napari https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.2/idr0070A/9838562.zarr/1
MoBIE plugin for ImageJ/Fiji. See MoBIE guide for installation. Plugins > BigDataViewer > OME ZARR >
Open OME ZARR from S3…. https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.2/idr0070A/9838562.zarr/1

{

multiscales: [
- {
  
  metadata: { ... } , // 2 items
  
  datasets: [ ... ] , // 7 items
  
  "version": "0.2"
  }
]

}

Multiscale 0

7 Datasets checked ✓

Path 0/.zarray

	Array	Chunk
Bytes	312.33 MB	1.05 MB
Shape	[1,3,1,9376,11104]	[1,1,1,1024,1024]
Counts	1,3,1,10,11	330 Chunks
Type	>u1	numpy.ndarray

Load chunk:

11104

9376

0/.zarray

{
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  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    9376,
    11104
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 1/.zarray

	Array	Chunk
Bytes	78.08 MB	1.05 MB
Shape	[1,3,1,4688,5552]	[1,1,1,1024,1024]
Counts	1,3,1,5,6	90 Chunks
Type	>u1	numpy.ndarray

Load chunk:

5552

4688

1/.zarray

{
  "chunks": [
    1,
    1,
    1,
    1024,
    1024
  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    4688,
    5552
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 2/.zarray

	Array	Chunk
Bytes	19.52 MB	1.05 MB
Shape	[1,3,1,2344,2776]	[1,1,1,1024,1024]
Counts	1,3,1,3,3	27 Chunks
Type	>u1	numpy.ndarray

Load chunk:

2776

2344

2/.zarray

{
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    1,
    1,
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  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    2344,
    2776
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 3/.zarray

	Array	Chunk
Bytes	4.88 MB	1.05 MB
Shape	[1,3,1,1172,1388]	[1,1,1,1024,1024]
Counts	1,3,1,2,2	12 Chunks
Type	>u1	numpy.ndarray

Load chunk:

1388

1172

3/.zarray

{
  "chunks": [
    1,
    1,
    1,
    1024,
    1024
  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    1172,
    1388
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 4/.zarray

	Array	Chunk
Bytes	1.22 MB	406.68 KB
Shape	[1,3,1,586,694]	[1,1,1,586,694]
Counts	1,3,1,1,1	3 Chunks
Type	>u1	numpy.ndarray

Load chunk:

694

586

4/.zarray

{
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    1,
    1,
    586,
    694
  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    586,
    694
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 5/.zarray

	Array	Chunk
Bytes	305.01 KB	101.67 KB
Shape	[1,3,1,293,347]	[1,1,1,293,347]
Counts	1,3,1,1,1	3 Chunks
Type	>u1	numpy.ndarray

Load chunk:

347

293

5/.zarray

{
  "chunks": [
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    1,
    1,
    293,
    347
  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    293,
    347
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Path 6/.zarray

	Array	Chunk
Bytes	75.77 KB	25.26 KB
Shape	[1,3,1,146,173]	[1,1,1,146,173]
Counts	1,3,1,1,1	3 Chunks
Type	>u1	numpy.ndarray

Load chunk:

173

146

6/.zarray

{
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    1,
    1,
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  ],
  "compressor": {
    "clevel": 5,
    "blocksize": 0,
    "shuffle": 1,
    "cname": "lz4",
    "id": "blosc"
  },
  "dtype": ">u1",
  "fill_value": 0,
  "filters": null,
  "order": "C",
  "shape": [
    1,
    3,
    1,
    146,
    173
  ],
  "zarr_format": 2,
  "dimension_separator": "/"
}

Image: 1

Multiscale 0